STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH93330.1Metallo-beta-lactamase superfamily protein. (363 aa)    
Predicted Functional Partners:
SDH93312.1
Hypothetical protein.
       0.805
SDI12306.1
Phage portal protein, lambda family.
  
     0.471
SDH78629.1
Pectate lyase.
  
    0.444
SDH55753.1
OmpA family protein.
  
     0.440
SDH36201.1
MSHA biogenesis protein MshQ.
  
    0.437
SDH93293.1
5'-nucleotidase.
       0.406
SDH55726.1
Von Willebrand factor type A domain-containing protein.
  
    0.405
Your Current Organism:
Vibrio xiamenensis
NCBI taxonomy Id: 861298
Other names: CGMCC 1.10228, DSM 22851, V. xiamenensis, Vibrio sp. G21, Vibrio xiamenensis Gao et al. 2012, strain G21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.