STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_0065LmbE family protein. (836 aa)    
Predicted Functional Partners:
J421_1758
Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.770
J421_1517
Protein of unknown function DUF2911.
  
     0.768
J421_2173
Protein of unknown function DUF2911.
  
     0.765
J421_0751
Protein of unknown function DUF2911.
  
    0.706
J421_0105
Hypothetical protein.
  
     0.632
J421_3229
Protein of unknown function UCP012535; Belongs to the BshC family.
 
   
 0.610
J421_0064
LmbE family protein.
 
    
0.601
J421_1564
DinB-like domain protein.
  
    0.581
J421_2070
Protein of unknown function DUF1094; Belongs to the UPF0403 family.
  
     0.567
J421_0066
2-oxoglutarate dehydrogenase, E1 subunit.
       0.545
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.