STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_0081Peroxiredoxin, OsmC subfamily. (121 aa)    
Predicted Functional Partners:
J421_0237
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.614
J421_3794
Intracellular protease, PfpI family.
 
  
 0.596
J421_0082
Protein of unknown function DUF4403.
       0.556
J421_1757
NADP-dependent oxidoreductase domain protein.
  
  
 0.542
J421_1623
Protein of unknown function DUF3574.
   
  
 0.496
J421_3912
Ribonuclease BN.
 
    0.456
J421_4328
Stress-induced protein, KGG, repeat-containing protein.
   
    0.454
J421_2721
ATP-binding region ATPase domain protein.
   
  
 0.450
J421_1921
ATP-binding region ATPase domain protein.
   
  
 0.430
J421_3453
Protein phosphatase 2C domain protein.
  
    0.424
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.