Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
J421_1111 | J421_1112 | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | MATE efflux family protein. | 0.603 |
J421_1111 | J421_1113 | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Hypothetical protein. | 0.434 |
J421_1112 | J421_1111 | MATE efflux family protein. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.603 |
J421_1112 | J421_1113 | MATE efflux family protein. | Hypothetical protein. | 0.561 |
J421_1112 | J421_1840 | MATE efflux family protein. | Squalene/phytoene synthase. | 0.533 |
J421_1112 | J421_1859 | MATE efflux family protein. | Sodium/hydrogen exchanger. | 0.415 |
J421_1112 | J421_1860 | MATE efflux family protein. | Hypothetical protein. | 0.515 |
J421_1112 | J421_2363 | MATE efflux family protein. | Squalene/phytoene synthase. | 0.533 |
J421_1112 | J421_2888 | MATE efflux family protein. | Competence-damaged protein; Belongs to the CinA family. | 0.447 |
J421_1112 | J421_3310 | MATE efflux family protein. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.570 |
J421_1112 | J421_3420 | MATE efflux family protein. | RNA binding S1 domain protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.542 |
J421_1113 | J421_1111 | Hypothetical protein. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.434 |
J421_1113 | J421_1112 | Hypothetical protein. | MATE efflux family protein. | 0.561 |
J421_1840 | J421_1112 | Squalene/phytoene synthase. | MATE efflux family protein. | 0.533 |
J421_1840 | J421_3310 | Squalene/phytoene synthase. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.718 |
J421_1840 | J421_3420 | Squalene/phytoene synthase. | RNA binding S1 domain protein; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.640 |
J421_1859 | J421_1112 | Sodium/hydrogen exchanger. | MATE efflux family protein. | 0.415 |
J421_1859 | J421_1860 | Sodium/hydrogen exchanger. | Hypothetical protein. | 0.946 |
J421_1860 | J421_1112 | Hypothetical protein. | MATE efflux family protein. | 0.515 |
J421_1860 | J421_1859 | Hypothetical protein. | Sodium/hydrogen exchanger. | 0.946 |
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