STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_1231Protein kinase. (1025 aa)    
Predicted Functional Partners:
J421_3777
Protein phosphatase 2C domain protein.
  
   0.808
J421_2843
Protein phosphatase 2C domain protein.
  
   0.806
J421_0787
Protein phosphatase 2C domain protein.
  
   0.799
J421_1230
Protein kinase.
 
    
0.761
J421_1229
RNA polymerase sigma factor.
   
   0.717
J421_1232
Pyrrolo-quinoline quinone beta-propeller repeat-containing protein.
       0.505
J421_1227
Hypothetical protein.
       0.503
J421_1228
Hypothetical protein.
       0.503
J421_4118
Protein kinase.
  
 
  
0.461
J421_3868
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 
 0.420
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.