STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_1878Hypothetical protein. (63 aa)    
Predicted Functional Partners:
J421_1879
Pyridine nucleotide-disulfide oxidoreductase, FAD/NAD(P)-binding domain protein.
       0.773
J421_1880
Electron transfer DM13.
       0.746
J421_1881
Hypothetical protein.
       0.624
J421_1882
Protein of unknown function DUF2260.
       0.624
J421_1883
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.504
J421_1884
Putative transmembrane anti-sigma factor.
       0.504
J421_1875
Protein of unknown function DUF336.
       0.426
J421_1876
SMP-30/Gluconolaconase/LRE-like region-containing protein.
       0.426
J421_1877
Alcohol dehydrogenase GroES domain protein.
       0.426
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.