STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2157Transcriptional activator domain-containing protein. (1126 aa)    
Predicted Functional Partners:
J421_2158
MobA-like NTP transferase domain protein.
       0.599
J421_3868
Adenylyl cyclase class-3/4/guanylyl cyclase.
 
  
 0.481
J421_2159
[2Fe-2S]-binding domain-containing protein.
       0.428
J421_2160
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein.
  
    0.417
J421_2161
Molybdopterin dehydrogenase FAD-binding protein.
       0.416
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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