STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2210Dicarboxylate carrier MatC domain protein. (415 aa)    
Predicted Functional Partners:
J421_2209
AMP-dependent synthetase and ligase.
       0.773
J421_2208
Protein of unknown function DUF305.
 
     0.666
J421_2207
Hypothetical protein.
 
     0.640
J421_0596
Hypothetical protein.
  
     0.626
J421_4344
Regulatory protein TetR.
  
   
 0.557
J421_2206
Protein of unknown function DUF3592.
       0.495
J421_2211
Amidase; Belongs to the amidase family.
  
    0.463
J421_0074
Endonuclease/exonuclease/phosphatase.
 
     0.462
J421_1767
Peptidase S1 and S6 chymotrypsin/Hap.
  
     0.428
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
  
    0.426
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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