STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2317ABC transporter related protein. (547 aa)    
Predicted Functional Partners:
J421_2316
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
J421_2315
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
J421_2318
Basic membrane lipoprotein.
 
 0.995
J421_1178
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
J421_1179
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.985
J421_1168
Basic membrane lipoprotein.
 
 
 0.979
J421_1175
ABC transporter related protein.
  
  
 
0.912
J421_0493
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
     0.862
J421_2314
Major facilitator superfamily MFS_1.
       0.773
J421_0353
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
     0.685
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.