STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2343Polysaccharide deacetylase. (343 aa)    
Predicted Functional Partners:
J421_4336
Putative glycosyl hydrolase domain DUF4015.
     0.730
J421_1061
Protein of unknown function DUF2225.
  
     0.693
J421_0107
Polysaccharide deacetylase.
 
  
 0.623
J421_4311
Transcriptional activator domain-containing protein.
  
     0.618
J421_1682
Transcriptional activator domain-containing protein.
 
     0.597
J421_1860
Hypothetical protein.
 
     0.589
J421_4161
Cell surface SprA.
  
     0.567
J421_1020
Transcriptional activator domain-containing protein.
  
     0.557
J421_3547
Hypothetical protein.
  
     0.549
J421_0313
Transcriptional activator domain-containing protein.
  
     0.543
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.