STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2401D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (533 aa)    
Predicted Functional Partners:
J421_3926
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
  
  
 
0.925
J421_2113
Beta-lactamase.
     
 0.903
J421_3605
Beta-lactamase.
     
 0.903
J421_4369
Peptidase U61 LD-carboxypeptidase A.
 
  
 0.790
J421_2402
Hypothetical protein.
 
     0.560
J421_1420
ErfK/YbiS/YcfS/YnhG family protein.
     
 0.525
J421_2234
ErfK/YbiS/YcfS/YnhG family protein.
     
 0.525
J421_3394
Rod shape-determining protein RodA; Belongs to the SEDS family.
     
 0.507
J421_2403
Hypothetical protein.
       0.504
J421_1361
Ankyrin repeat-containing domain-containing protein.
   
 
 0.421
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.