STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2456Protein of unknown function DUF95 transmembrane. (614 aa)    
Predicted Functional Partners:
J421_2457
Protein of unknown function DUF58.
 
  
 0.847
J421_3998
RNA-binding S4 domain protein.
  
    0.586
J421_2455
PEP motif putative anchor domain protein.
  
    0.574
J421_2461
Hypothetical protein.
 
     0.530
J421_2454
Lipolytic protein G-D-S-L family.
 
     0.494
J421_3749
Protein of unknown function DUF58.
 
  
 0.464
J421_3151
Protein of unknown function DUF58.
 
  
 0.456
J421_2310
Recombinase.
  
  
 0.450
J421_1691
Transcriptional regulator domain-containing protein.
  
    0.434
J421_1342
Helix-turn-helix, AraC domain-containing protein.
  
    0.424
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.