STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_2802D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein. (374 aa)    
Predicted Functional Partners:
J421_2469
Homocysteine S-methyltransferase.
   
 
 0.785
J421_2801
Hypothetical protein.
       0.773
J421_1592
Aspartate kinase.
  
 
 0.743
J421_2803
Twitching motility protein.
       0.655
trpS
Tryptophan-tRNA ligase, bacterial-type; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.614
udk
Uridine kinase.
   
  0.597
J421_2800
Ig domain protein group 2 domain protein.
       0.580
J421_2798
Inositol monophosphatase.
 
   
 0.566
J421_2804
Dihydrodipicolinate synthetase; Belongs to the DapA family.
 
    0.536
rplF
Ribosomal protein L6, subgroup; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.493
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.