STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_3104DNA internalization-related competence protein ComEC/Rec2. (795 aa)    
Predicted Functional Partners:
J421_3311
Hypothetical protein.
 
  
 0.899
J421_3471
DNA protecting protein DprA.
 
  
 0.884
J421_3105
Hypothetical protein.
       0.775
J421_3832
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.764
J421_4156
Type II secretion system F domain-containing protein.
  
  
 0.712
J421_4402
Type II secretion system F domain-containing protein.
  
  
 0.712
J421_3531
Cell division FtsK/SpoIIIE.
 
  
 0.710
fbp
Fructose-1,6-bisphosphatase class 1; Belongs to the FBPase class 1 family.
       0.682
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.639
J421_2913
Mg chelatase, subunit ChlI.
 
  
 0.638
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.