STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_3491Polysaccharide biosynthesis protein CapD. (658 aa)    
Predicted Functional Partners:
J421_3493
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.978
J421_3570
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.939
J421_3488
Polysaccharide export protein.
  
  
 0.888
J421_3486
Hypothetical protein.
  
  
 0.879
J421_2498
Capsular exopolysaccharide family.
 
  
 0.864
J421_3483
Polysaccharide biosynthesis protein.
  
  
 0.849
J421_3487
Lipopolysaccharide biosynthesis protein.
  
  
 0.849
J421_3490
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.849
J421_3494
Sugar transferase.
  
 0.849
J421_3485
Glycosyl transferase group 1.
  
  
 0.812
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.