STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_3841ATP-binding region ATPase domain protein. (467 aa)    
Predicted Functional Partners:
J421_3840
Response regulator receiver.
 0.996
J421_3172
Response regulator receiver.
 
 0.982
J421_2716
Response regulator receiver.
 
   0.967
J421_2542
Diguanylate cyclase.
   
 0.965
J421_2715
Diguanylate cyclase.
   
 0.958
J421_0931
Response regulator receiver.
 
 0.951
J421_1893
Transcriptional regulator domain-containing protein.
  
 0.927
J421_1396
Response regulator receiver.
 
 0.837
J421_2638
Response regulator receiver.
 
 0.836
J421_1485
Response regulator receiver.
 
 0.832
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.