STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_3976Type II and III secretion system protein. (730 aa)    
Predicted Functional Partners:
J421_3981
Type IV pilus assembly protein PilM.
 
  
 0.929
J421_3978
Pilus assembly protein PilO.
 
   
 0.905
J421_3980
Fimbrial assembly family protein.
     
 0.815
J421_3977
Hypothetical protein.
       0.778
J421_3979
Hypothetical protein.
       0.773
J421_3975
Hypothetical protein.
       0.765
J421_3554
MotA/TolQ/ExbB proton channel.
  
    0.700
J421_3553
Biopolymer transport protein ExbD/TolR.
  
     0.695
J421_3617
MotA/TolQ/ExbB proton channel.
  
    0.694
J421_3218
Outer membrane protein assembly complex, YaeT protein.
  
     0.682
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.