STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4129RagB/SusD domain-containing protein. (530 aa)    
Predicted Functional Partners:
J421_4130
TonB-dependent outer membrane protein, SusC/RagA.
     0.944
J421_4463
TonB-dependent outer membrane protein, SusC/RagA.
  
   
 0.770
J421_2249
TonB-dependent outer membrane protein, SusC/RagA.
  
     0.765
J421_2247
TonB-dependent outer membrane protein, SusC/RagA.
  
     0.764
J421_1190
TonB-dependent outer membrane protein, SusC/RagA.
 
     0.753
J421_0360
TonB-dependent outer membrane protein, SusC/RagA.
 
     0.748
J421_4131
Membrane of secreted protein.
 
     0.747
J421_0357
TonB-dependent outer membrane protein SusC/RagA, conserved site.
  
   
 0.745
J421_2223
TonB-dependent outer membrane protein, SusC/RagA.
  
     0.737
J421_4523
TonB-dependent outer membrane protein, SusC/RagA.
 
     0.737
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.