STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4163Permease YjgP/YjgQ family protein. (365 aa)    
Predicted Functional Partners:
J421_4162
Permease YjgP/YjgQ family protein.
  
  0.989
J421_3251
ABC transporter related protein.
 
 
 0.982
J421_0689
Permease YjgP/YjgQ family protein.
  
  
 
0.900
J421_4161
Cell surface SprA.
 
     0.765
J421_3253
Protein of unknown function DUF1239.
  
 
 0.716
J421_3547
Hypothetical protein.
 
  
 0.712
J421_3224
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.635
J421_4164
Protein of unknown function DUF140.
 
   
 0.633
J421_4271
Outer membrane efflux protein.
  
     0.623
J421_4404
Type II and III secretion system protein.
  
    0.622
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.