STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4187Hypothetical protein. (239 aa)    
Predicted Functional Partners:
J421_3897
Peptidase M48 Ste24p.
  
     0.763
J421_0114
Histidine kinase dimerization and phosphoacceptor region.
  
  
 0.701
J421_0271
Histidine kinase dimerization and phosphoacceptor region.
  
  
 0.698
J421_2754
PspA/IM30 family protein.
  
  
 0.669
J421_4377
Hypothetical protein.
 
  
 0.587
J421_2847
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
   
    0.503
J421_3247
Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD.
  
   
 0.495
J421_4378
Protein of unknown function DUF4098.
  
  
 0.487
J421_4487
Protein of unknown function DUF4098.
  
  
 0.487
J421_4186
Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.429
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.