STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4379Protein of unknown function DUF4098. (259 aa)    
Predicted Functional Partners:
J421_4377
Hypothetical protein.
 
     0.821
J421_4378
Protein of unknown function DUF4098.
 
    
0.680
J421_0690
DinB-like domain protein.
  
     0.583
J421_0240
Hypothetical protein.
  
     0.503
J421_4380
Protein of unknown function UPF0005; Belongs to the BI1 family.
       0.500
J421_4375
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
       0.487
J421_4376
Hypothetical protein.
       0.487
J421_1010
Hypothetical protein.
  
     0.478
J421_2183
Hypothetical protein.
  
     0.465
J421_1402
Hypothetical protein.
  
     0.464
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.