STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4404Type II and III secretion system protein. (604 aa)    
Predicted Functional Partners:
J421_4403
Type II secretion system protein E.
 
  
 0.921
J421_4402
Type II secretion system F domain-containing protein.
 
  
 0.911
J421_4409
Hypothetical protein.
  
  
 0.780
J421_4406
General secretion pathway M protein.
       0.714
J421_4405
Hypothetical protein.
       0.693
J421_4407
Hypothetical protein.
       0.693
J421_4408
Hypothetical protein.
       0.693
J421_4410
Hypothetical protein.
       0.693
J421_4411
Hypothetical protein.
       0.693
J421_4138
Type III secretion FHIPEP protein.
  
 
 0.677
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.