STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J421_4524Regulatory protein LacI. (340 aa)    
Predicted Functional Partners:
J421_2348
Ferredoxin-dependent glutamate synthase.
    
 
 0.816
J421_3126
Phosphocarrier, HPr family.
 
 
 
 0.681
J421_0494
Periplasmic binding protein domain protein.
 
  
 0.613
J421_0353
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.552
J421_4525
GDSL family lipase.
       0.545
xylB
Xylulokinase.
 
 
 
 0.537
J421_0493
ABC-type transporter, integral membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.525
J421_0352
Periplasmic binding protein domain protein.
 
  
 0.486
Your Current Organism:
Gemmatirosa kalamazoonesis
NCBI taxonomy Id: 861299
Other names: ATCC BAA-2150, G. kalamazoonesis, Gemmatimonadetes bacterium KBS708, NCCB 100411, strain KBS708
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.