STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_01860Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. (284 aa)    
Predicted Functional Partners:
xthA
Exodeoxyribonuclease III; Removes the damaged DNA at cytosines and guanines by cleaving on the 3 -side of the apurinic/apyrimidinic sites.
       0.812
AARI_25670
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.722
AARI_34260
Hypothetical membrane protein; 1 transmembrane helice predicted by TMHMM2.0.
  
     0.709
AARI_09610
Conserved hypothetical membrane protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.990) with cleavage site probability 0.909 between position 29 and 30. 7 transmembrane helices predicted by TMHMM2.0 after the signal peptide.
  
     0.672
AARI_06180
Conserved hypothetical membrane protein; 8 transmembrane helices predicted by TMHMM2.0.
  
     0.666
AARI_25050
NUDIX hydrolase; Identified by match to PF00293. Members of the Nudix hydrolase superfamily catalyze the hydrolysis of nucleoside diphosphates linked to other moieties. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain ce [...]
  
     0.656
AARI_09600
Hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0.
  
     0.635
AARI_07640
Hypothetical membrane protein; 1 transmembrane helice predicted by TMHMM2.0.
  
     0.631
AARI_12760
Conserved hypothetical membrane protein; 1 transmembrane helice predicted by TMHMM2.0.
  
     0.624
AARI_08640
Hypothetical membrane protein; 5 transmembrane helices predicted by TMHMM2.0.
  
     0.593
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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