STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_03870Similar to putative excisionases from Mycobacterium phages. (243 aa)    
Predicted Functional Partners:
AARI_03880
Putative bifunctional primase/DNA polymerase protein; Match to protein family PF09250.
 
   
 0.959
AARI_03890
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.957
AARI_03840
Match to protein family PF02195. Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA.
 
     0.952
AARI_03820
Putative secreted M23 family peptidase; Identified by match to protein family PF01551. Members of this family are zinc metallopeptidases with a range of specificities. Peptidase family M23 are also endopeptidases. Signal peptide predicted by SignalP 3.0 HMM (probability: 1.000) with cleavage site probability 0. 740 between position 37 and 38.
 
     0.903
AARI_03850
6 Protein of unknown function, without similarity to other proteins.
       0.807
AARI_03860
6 Protein of unknown function, without similarity to other proteins.
       0.799
AARI_03790
Putative TonB-box containing protein; Match to PS00430: TonB-dependent receptor proteins signature. In Escherichia coli the TonB protein interacts with outer membrane receptor proteins that carry out high-affinity binding and energy-dependent uptake of specific substrates into the periplasmic space. 2 transmembrane helices predicted by TMHMM2.0.
 
     0.779
AARI_03780
Conserved hypothetical membrane protein; 7 transmembrane helices predicted by TMHMM2.0.
 
     0.778
AARI_03770
Conserved hypothetical membrane protein; 2 transmembrane helices predicted by TMHMM2.0.
 
     0.776
AARI_03730
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.775
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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