STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_04190Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. (206 aa)    
Predicted Functional Partners:
AARI_03670
Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0.
 
      0.809
AARI_04200
Pseudouridylate synthase; Identified by match to protein family PF00849. Pseudouridylate synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
       0.639
AARI_04170
Conserved hypothetical protein; 5.1 Protein of unknown function similar to other proteins from the same organism.
       0.615
AARI_04180
5.1 Protein of unknown function similar to other proteins from the same organism.
       0.615
AARI_04210
Identified by match to protein family PF02567. PhzC/PhzF is involved in dimerisation of two 2, 3-dihydro-3- oxo-anthranilic acid molecules to create phenazine-1- carboxylic acid (PCA) by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis. Many phenazine compounds are found in nature and are produced by bacteria such as Pseudomonas spp., Streptomyces spp., and Pantoea agglomerans. These compounds have been implicated in the virulence and competitive fitness of producing organisms. For example, the phenazine pyocyanin produced by Pse [...]
       0.469
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.