Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| AARI_04190 | AARI_04200 | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | Pseudouridylate synthase; Identified by match to protein family PF00849. Pseudouridylate synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). | 0.639 |
| AARI_04190 | AARI_04210 | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | Identified by match to protein family PF02567. PhzC/PhzF is involved in dimerisation of two 2, 3-dihydro-3- oxo-anthranilic acid molecules to create phenazine-1- carboxylic acid (PCA) by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis. Many phenazine compounds are found in nature and are produced by bacteria such as Pseudomonas spp., Streptomyces spp., and Pantoea agglomerans. These compounds have been implicated in the virulence and competitive fitness of producing organisms. For example, the phenazine pyocyanin produced by Pse [...] | 0.469 |
| AARI_04200 | AARI_04190 | Pseudouridylate synthase; Identified by match to protein family PF00849. Pseudouridylate synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | 0.639 |
| AARI_04200 | AARI_04210 | Pseudouridylate synthase; Identified by match to protein family PF00849. Pseudouridylate synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). | Identified by match to protein family PF02567. PhzC/PhzF is involved in dimerisation of two 2, 3-dihydro-3- oxo-anthranilic acid molecules to create phenazine-1- carboxylic acid (PCA) by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis. Many phenazine compounds are found in nature and are produced by bacteria such as Pseudomonas spp., Streptomyces spp., and Pantoea agglomerans. These compounds have been implicated in the virulence and competitive fitness of producing organisms. For example, the phenazine pyocyanin produced by Pse [...] | 0.557 |
| AARI_04210 | AARI_04190 | Identified by match to protein family PF02567. PhzC/PhzF is involved in dimerisation of two 2, 3-dihydro-3- oxo-anthranilic acid molecules to create phenazine-1- carboxylic acid (PCA) by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis. Many phenazine compounds are found in nature and are produced by bacteria such as Pseudomonas spp., Streptomyces spp., and Pantoea agglomerans. These compounds have been implicated in the virulence and competitive fitness of producing organisms. For example, the phenazine pyocyanin produced by Pse [...] | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | 0.469 |
| AARI_04210 | AARI_04200 | Identified by match to protein family PF02567. PhzC/PhzF is involved in dimerisation of two 2, 3-dihydro-3- oxo-anthranilic acid molecules to create phenazine-1- carboxylic acid (PCA) by P. fluorescens. This family also contains a putative thymidilate synthase from Mycobacterium tuberculosis. Many phenazine compounds are found in nature and are produced by bacteria such as Pseudomonas spp., Streptomyces spp., and Pantoea agglomerans. These compounds have been implicated in the virulence and competitive fitness of producing organisms. For example, the phenazine pyocyanin produced by Pse [...] | Pseudouridylate synthase; Identified by match to protein family PF00849. Pseudouridylate synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). | 0.557 |