STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betTHigh-affinity choline transport protein; Identified by similarity to protein SP:P0ABC9 (Escherichia coli). Betaine/carnitine/choline fransporter (BCCT) family, choline:H+ symporter (TC 2.A.15.3.1). Involved in the osmoregulatory choline-glycine betaine pathway (choline uptake). (714 aa)    
Predicted Functional Partners:
betB
Betaine-aldehyde dehydrogenase; Involved in the synthesis of the osmoprotectant betaine; Belongs to the aldehyde dehydrogenase family.
 
  
 0.879
codA-2
Choline oxidase; Catalyzes the following reaction: choline + O2 <=> betaine aldehyde + H2O2. Involved in the synthesis of the osmoprotectant betaine.
 
  
 0.859
manC
Putative mannose-1-phosphate guanylyltransferase; Catalyses the following reaction: GDP + alpha-D-mannose 1-phosphate <=> phosphate + GDP-mannose. Participates in fructose and mannose metabolism.
  
    0.502
AARI_07280
Putative metal-dependent amidase/aminoacylase/carboxypeptidase.
       0.451
glpF
Glycerol facilitators function as solute nonspecific channels, and may transport glycerol, dihydroxyacetone, propanediol, urea and other small neutral molecules in physiologically important processes. Belongs to the the Major Intrinsic Protein (MIP) family (TC 1.A.8.y.z).
      
 0.434
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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