STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_08010Putative ABC transporter, ATP-binding subunit; TCDB: ATP-binding cassette (ABC) superfamily, lipoprotein translocase (LPT) family (TC 3.A.1.125.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), o228 family (members of this family might be involved in a more general lipoprotein releasing mechanism common to all prokaryotes). (206 aa)    
Predicted Functional Partners:
AARI_08000
Hypothetical membrane protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 1.000) with cleavage site probability 0.575 between position 36 and 37. 7 transmembrane helices predicted by TMHMM2.0 after the signal peptide.
  
 
 0.916
AARI_03590
TCDB: ATP-binding cassette (ABC) superfamily (TC 3. A.1.y.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), DRI-family.
 
  
 0.778
AARI_31770
TCDB: ATP-binding cassette (ABC) superfamily, peptide/opine/nickel uptake transporter (PepT) family (TC 3.A.1.5.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), OPN-family (oligopeptides and nickel).
  
     0.775
AARI_13320
Putative ABC transporter, inner membrane subunit; TC 3.A.1.y.z. ABCISSE: ABC transporter, permease (IM).
 
 0.759
AARI_06310
Putative permease; Match to PF02687: this is a family of predicted permeases and hypothetical transmembrane proteins.
  
 
 0.697
AARI_13340
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
 
 0.663
AARI_15980
TC 3.A.1.y.z. ABCISSE: ABC transporter, ATP-binding protein (ABC), YLU-family (unclassified systems).
  
     0.663
rpsE
30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   
 0.643
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.630
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
   
 0.607
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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