STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_12330Anti-sigma factor; May act on RpoE. Match to protein family TIGR02949. Anti-sigma factors bind to sigma factors and inhibit their transcriptional activity. (86 aa)    
Predicted Functional Partners:
rpoE
The sigma factor RpoE is involved in heat shock and oxidative stress response; it is believed to control protein processing in the extracytoplasmic compartment; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.983
AARI_11200
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
   
 0.754
AARI_20120
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
     0.750
AARI_22560
Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.976) with cleavage site probability 0.602 between position 37 and 38.
  
     0.749
AARI_28670
RNA polymerase sigma factor; Match to protein family TIGR02937. Sigma-70 family; Belongs to the sigma-70 factor family.
  
 
 0.690
AARI_34260
Hypothetical membrane protein; 1 transmembrane helice predicted by TMHMM2.0.
 
     0.686
AARI_16850
5.2 Protein of unknown function similar to proteins from other organisms.
  
 
 0.684
AARI_32240
Possible RNA polymerase sigma factor; C-terminal part of the protein: Sigma 70 regions 2 and 4 (PF04542, PF08281). Presence of numerous PT repeats (XPTX) at the C-terminal part of the protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.681
AARI_02480
RNA polymerase sigma factor; Match to protein family TIGR02937. Sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.680
AARI_10250
RNA polymerase sigma factor; Match to protein family TIGR02937. Sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.680
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.