Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AARI_02970 | AARI_05100 | AARI_02970 | AARI_05100 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | 0.418 |
| AARI_02970 | AARI_09490 | AARI_02970 | AARI_09490 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Putative cytochrome P450. | 0.586 |
| AARI_02970 | AARI_11110 | AARI_02970 | AARI_11110 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Putative ATP-dependent helicase; Possible DNA or RNA helicase. | 0.527 |
| AARI_02970 | AARI_33050 | AARI_02970 | AARI_33050 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Sulfate Permease (SulP) Family, sulfate permease (TC 2.A.53.3.1). | 0.795 |
| AARI_02970 | polA | AARI_02970 | AARI_19350 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.663 |
| AARI_02970 | qcrB | AARI_02970 | AARI_16670 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | In Corynebacterium glutamicum, a cytochrome aa3 terminal oxidase (EC 1.9.3.1) receives electrons from a bc1 complex (EC 1.10.2.2). The bc1 complex is encoded by qcrA (Rieske iron-sulfur protein), qcrB (cytochrome B) and qcrC (cytochrome c1). Cytochrome aa3 is composed of subunits I (ctaD), II (ctaC), III (ctaE) and IV (ctaF). These subunits form the cytochrome bc1-aa3 supercomplex. | 0.738 |
| AARI_02970 | recA | AARI_02970 | AARI_11010 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.526 |
| AARI_02970 | sbcC | AARI_02970 | AARI_13060 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Putative nuclease SbcCD subunit C; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3 ->5 double strand exonuclease that can open hairpins. It also has a 5 single-strand endonuclease activity. | 0.557 |
| AARI_02970 | sbcD | AARI_02970 | AARI_13050 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Putative nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.795 |
| AARI_02970 | topA | AARI_02970 | AARI_24760 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.409 |
| AARI_05100 | AARI_02970 | AARI_05100 | AARI_02970 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | 0.418 |
| AARI_05100 | AARI_09490 | AARI_05100 | AARI_09490 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | Putative cytochrome P450. | 0.491 |
| AARI_05100 | AARI_11110 | AARI_05100 | AARI_11110 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | Putative ATP-dependent helicase; Possible DNA or RNA helicase. | 0.710 |
| AARI_05100 | polA | AARI_05100 | AARI_19350 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.968 |
| AARI_05100 | recA | AARI_05100 | AARI_11010 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.944 |
| AARI_05100 | sbcC | AARI_05100 | AARI_13060 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | Putative nuclease SbcCD subunit C; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3 ->5 double strand exonuclease that can open hairpins. It also has a 5 single-strand endonuclease activity. | 0.905 |
| AARI_05100 | sbcD | AARI_05100 | AARI_13050 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | Putative nuclease SbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.910 |
| AARI_05100 | topA | AARI_05100 | AARI_24760 | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.989 |
| AARI_09490 | AARI_02970 | AARI_09490 | AARI_02970 | Putative cytochrome P450. | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | 0.586 |
| AARI_09490 | AARI_05100 | AARI_09490 | AARI_05100 | Putative cytochrome P450. | Putative ATP-dependent DNA helicase; Match to protein family TIGR00614: recQ family. | 0.491 |
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