STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_13330TC 3.A.1.y.z. ABCISSE: ABC transporter, ATP-binding protein (ABC). (235 aa)    
Predicted Functional Partners:
AARI_13320
Putative ABC transporter, inner membrane subunit; TC 3.A.1.y.z. ABCISSE: ABC transporter, permease (IM).
 
 0.988
AARI_13340
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
 
 0.973
AARI_31780
TCDB: ATP-binding cassette (ABC) superfamily, peptide/opine/nickel uptake transporter (PepT) family (TC 3.A.1.5.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), OPN-family (oligopeptides and nickel).
 
    
0.869
tcyB
L-cystine ABC transporter, inner membrane subunit TcyB; TCDB: ATP-binding cassette (ABC) superfamily, polar amino acid uptake transporter (PAAT) family, glutamate porter (TC 3.A.1.3.14). ABCISSE: ABC transporter, permease (IM), PAO-family (polar amino acid and opines), L-cystine impot. Part of the ABC transporter complex TcyABC involved in L-cystine import. Identified by similarity to protein SP:P42200 (Bacillus subtilis).
 
 
  
 0.838
AARI_22890
Dipeptide/oligopeptide ABC transporter, ATP-binding subunit; TCDB: ATP-binding cassette (ABC) superfamily, peptide/opine/nickel uptake transporter (PepT) family (TC 3.A.1.5.z). ABCISSE: ABC transporter, ATP-binding protein (ABC), OPN-family (oligopeptides and nickel), oligopeptides import.
 
    
0.797
AARI_34850
Transposase of ISAar19, ISL3 family.
       0.773
AARI_06310
Putative permease; Match to PF02687: this is a family of predicted permeases and hypothetical transmembrane proteins.
 
 
 0.732
AARI_02660
Dipeptide/oligopeptide ABC transporter, inner membrane subunit; TCDB: ATP-binding cassette (ABC) superfamily, peptide/opine/nickel uptake transporter (PepT) family (TC 3.A.1.5.z). ABCISSE: ABC transporter, permease (IM), OPN-family (oligopeptides and nickel), oligopeptides import.
 
 
    0.692
AARI_08000
Hypothetical membrane protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 1.000) with cleavage site probability 0.575 between position 36 and 37. 7 transmembrane helices predicted by TMHMM2.0 after the signal peptide.
  
 
 0.645
AARI_22900
Dipeptide/oligopeptide ABC transporter, inner membrane subunit; TCDB: ATP-binding cassette (ABC) superfamily, peptide/opine/nickel uptake transporter (PepT) family (TC 3.A.1.5.z). ABCISSE: ABC transporter, permease (IM), OPN-family (oligopeptides and nickel), oligopeptides import.
 
 
    0.575
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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