STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_15900Conserved hypothetical membrane protein; 2 transmembrane helices predicted by TMHMM2.0. Signal peptide predicted by SignalP 3.0 HMM (probability: 0.652) with cleavage site probability 0.343 between position 21 and 22. (303 aa)    
Predicted Functional Partners:
AARI_15910
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.862
AARI_15920
Conserved hypothetical membrane protein; 2 transmembrane helices predicted by TMHMM2.0.
 
     0.856
AARI_18830
Putative cytochrome oxidase assembly protein; Identified by match to protein family PF02628. One member of this family, CtaA, is required for cytochrome aa3 biosynthesis in Bacillus subtilis.
 
 
 0.770
AARI_07750
Putative cytochrome oxidase assembly protein; Identified by match to protein family PF02628. One member of this family, CtaA, is required for cytochrome aa3 biosynthesis in Bacillus subtilis.
 
 
 0.727
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.699
AARI_11200
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
  
 
   0.676
AARI_22560
Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.976) with cleavage site probability 0.602 between position 37 and 38.
  
     0.672
ctaC
Cytochrome aa3 subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.654
AARI_15940
Identified by match to PF00106. The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. Possibly involved in the metabolism of lipid.
 
 
   0.629
qcrC
Cytochrome bc1 complex cytochrome c1 subunit; In Corynebacterium glutamicum, a cytochrome aa3 terminal oxidase (EC 1.9.3.1) receives electrons from a bc1 complex (EC 1.10.2.2). The bc1 complex is encoded by qcrA (Rieske iron-sulfur protein), qcrB (cytochrome B) and qcrC (cytochrome c1). Cytochrome aa3 is composed of subunits I (ctaD), II (ctaC), III (ctaE) and IV (ctaF). These subunits form the cytochrome bc1-aa3 supercomplex.
 
  
 0.616
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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