Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AARI_00330 | AARI_16970 | AARI_00330 | AARI_16970 | Putative serine/threonine protein kinase; Identified by match to protein domain PD000001. Match to PS00108 pattern. Protein kinases are a group of enzymes that possess a catalytic subunit which transfers the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. They play a role in a mulititude of cellular processes, including division, proliferation, apoptosis, and differentiation. | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | 0.429 |
| AARI_00330 | ftsW | AARI_00330 | AARI_00360 | Putative serine/threonine protein kinase; Identified by match to protein domain PD000001. Match to PS00108 pattern. Protein kinases are a group of enzymes that possess a catalytic subunit which transfers the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. They play a role in a mulititude of cellular processes, including division, proliferation, apoptosis, and differentiation. | Cell division protein FtsW; Plays a role in the stabilization of the FtsZ ring during cell division; Belongs to the SEDS family. | 0.921 |
| AARI_07570 | AARI_16960 | AARI_07570 | AARI_16960 | Match to PF01478: Type IV leader peptidase family. This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A. Possibly involved in protein secretion. | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | 0.716 |
| AARI_07570 | AARI_16970 | AARI_07570 | AARI_16970 | Match to PF01478: Type IV leader peptidase family. This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A. Possibly involved in protein secretion. | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | 0.583 |
| AARI_14420 | AARI_16970 | AARI_14420 | AARI_16970 | Putative cell envelope-related transcriptional attenuator. | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | 0.595 |
| AARI_14500 | AARI_16970 | AARI_14500 | AARI_16970 | Putative cell envelope-related transcriptional attenuator. | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | 0.611 |
| AARI_16960 | AARI_07570 | AARI_16960 | AARI_07570 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | Match to PF01478: Type IV leader peptidase family. This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A. Possibly involved in protein secretion. | 0.716 |
| AARI_16960 | AARI_16970 | AARI_16960 | AARI_16970 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | 0.965 |
| AARI_16960 | AARI_16980 | AARI_16960 | AARI_16980 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | Identified by match to protein family PF02645: uncharacterised protein, DegV family COG1307. The structure of this protein revealed a bound fatty-acid molecule in a pocket between the two protein domains. The structure indicates that this family has the molecular function of fatty-acid binding and may play a role in the cellular functions of fatty acid transport or metabolism. | 0.843 |
| AARI_16960 | ftsW | AARI_16960 | AARI_00360 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | Cell division protein FtsW; Plays a role in the stabilization of the FtsZ ring during cell division; Belongs to the SEDS family. | 0.454 |
| AARI_16960 | holA | AARI_16960 | AARI_16950 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication once it is clamped onto DNA. DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII complex. PolIII associates with the gamma complex (composed of gamma, delta, delta prime, psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex. | 0.903 |
| AARI_16960 | leuS | AARI_16960 | AARI_16990 | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | leucine-tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.826 |
| AARI_16970 | AARI_00330 | AARI_16970 | AARI_00330 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Putative serine/threonine protein kinase; Identified by match to protein domain PD000001. Match to PS00108 pattern. Protein kinases are a group of enzymes that possess a catalytic subunit which transfers the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. They play a role in a mulititude of cellular processes, including division, proliferation, apoptosis, and differentiation. | 0.429 |
| AARI_16970 | AARI_07570 | AARI_16970 | AARI_07570 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Match to PF01478: Type IV leader peptidase family. This group of aspartic endopeptidases belong to MEROPS peptidase family A24 (type IV prepilin peptidase family, clan AD), subfamily A24A. Possibly involved in protein secretion. | 0.583 |
| AARI_16970 | AARI_14420 | AARI_16970 | AARI_14420 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Putative cell envelope-related transcriptional attenuator. | 0.595 |
| AARI_16970 | AARI_14500 | AARI_16970 | AARI_14500 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Putative cell envelope-related transcriptional attenuator. | 0.611 |
| AARI_16970 | AARI_16960 | AARI_16970 | AARI_16960 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Putative competence protein; Identified by match to protein family PF03772, some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. 10 transmembrane helices predicted by TMHMM2.0. | 0.965 |
| AARI_16970 | AARI_16980 | AARI_16970 | AARI_16980 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Identified by match to protein family PF02645: uncharacterised protein, DegV family COG1307. The structure of this protein revealed a bound fatty-acid molecule in a pocket between the two protein domains. The structure indicates that this family has the molecular function of fatty-acid binding and may play a role in the cellular functions of fatty acid transport or metabolism. | 0.846 |
| AARI_16970 | AARI_19330 | AARI_16970 | AARI_19330 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. | 0.569 |
| AARI_16970 | ftsW | AARI_16970 | AARI_00360 | Putative DNA uptake protein; Helix-hairpin-helix DNA-binding domain. The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins. | Cell division protein FtsW; Plays a role in the stabilization of the FtsZ ring during cell division; Belongs to the SEDS family. | 0.492 |
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