Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AARI_17290 | AARI_17310 | AARI_17290 | AARI_17310 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.770 |
| AARI_17290 | AARI_17320 | AARI_17290 | AARI_17320 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.558) with cleavage site probability 0.558 between position 23 and 24. | 0.643 |
| AARI_17290 | alaS | AARI_17290 | AARI_17300 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.945 |
| AARI_17290 | aroC | AARI_17290 | AARI_17260 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.572 |
| AARI_17290 | aroE | AARI_17290 | AARI_17270 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Fourth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids (phenylalanine, tyrosine and tryptophan), p-aminobenzoic acid, folate and ubiquinone. | 0.647 |
| AARI_17290 | aroK | AARI_17290 | AARI_17250 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.565 |
| AARI_17290 | miaA | AARI_17290 | AARI_11040 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA isopentenyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.547 |
| AARI_17290 | mltG | AARI_17290 | AARI_17280 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.740 |
| AARI_17290 | rpsD | AARI_17290 | AARI_17330 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 30S ribosomal protein S20; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.520 |
| AARI_17290 | ruvA | AARI_17290 | AARI_17470 | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.557 |
| AARI_17310 | AARI_17290 | AARI_17310 | AARI_17290 | 5.2 Protein of unknown function similar to proteins from other organisms. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.770 |
| AARI_17310 | AARI_17320 | AARI_17310 | AARI_17320 | 5.2 Protein of unknown function similar to proteins from other organisms. | Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.558) with cleavage site probability 0.558 between position 23 and 24. | 0.637 |
| AARI_17310 | alaS | AARI_17310 | AARI_17300 | 5.2 Protein of unknown function similar to proteins from other organisms. | alanine-tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.770 |
| AARI_17310 | aroC | AARI_17310 | AARI_17260 | 5.2 Protein of unknown function similar to proteins from other organisms. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.515 |
| AARI_17310 | aroE | AARI_17310 | AARI_17270 | 5.2 Protein of unknown function similar to proteins from other organisms. | Fourth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids (phenylalanine, tyrosine and tryptophan), p-aminobenzoic acid, folate and ubiquinone. | 0.550 |
| AARI_17310 | aroK | AARI_17310 | AARI_17250 | 5.2 Protein of unknown function similar to proteins from other organisms. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.508 |
| AARI_17310 | mltG | AARI_17310 | AARI_17280 | 5.2 Protein of unknown function similar to proteins from other organisms. | Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.665 |
| AARI_17310 | rpsD | AARI_17310 | AARI_17330 | 5.2 Protein of unknown function similar to proteins from other organisms. | 30S ribosomal protein S20; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.480 |
| AARI_17320 | AARI_17290 | AARI_17320 | AARI_17290 | Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.558) with cleavage site probability 0.558 between position 23 and 24. | Putative Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.643 |
| AARI_17320 | AARI_17310 | AARI_17320 | AARI_17310 | Conserved hypothetical secreted protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 0.558) with cleavage site probability 0.558 between position 23 and 24. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.637 |
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