STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_24630Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. (251 aa)    
Predicted Functional Partners:
AARI_26630
Match to protein domain PF01479. The S4 domain was detected in proteins such as the bacterial ribosomal protein S4, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.
  
    0.527
AARI_24620
Phosphoglycerate mutase family protein; Identified by match to protein domain PF00300.
  
    0.519
AARI_24580
Identified by match to protein family PF01578.
       0.511
AARI_24590
Identified by match to protein family PF05140.
       0.511
AARI_24600
Identified by match to PF02683: Cytochrome C biogenesis protein transmembrane region.
       0.511
AARI_24610
Redoxin domain-containing protein; Identified by match to protein family PF08534. This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins.
       0.511
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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