Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AARI_02970 | AARI_26500 | AARI_02970 | AARI_26500 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | 0.797 |
| AARI_02970 | ppiA | AARI_02970 | AARI_00120 | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.586 |
| AARI_19840 | AARI_25380 | AARI_19840 | AARI_25380 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 0.661 |
| AARI_19840 | AARI_26500 | AARI_19840 | AARI_26500 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | 0.910 |
| AARI_19840 | deaD | AARI_19840 | AARI_23990 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.661 |
| AARI_19840 | ppiA | AARI_19840 | AARI_00120 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.559 |
| AARI_19840 | rpsA | AARI_19840 | AARI_19320 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.979 |
| AARI_19840 | rpsD | AARI_19840 | AARI_17330 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 30S ribosomal protein S20; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.935 |
| AARI_19840 | rpsE | AARI_19840 | AARI_23310 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.813 |
| AARI_19840 | rpsK | AARI_19840 | AARI_23220 | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.930 |
| AARI_25380 | AARI_19840 | AARI_25380 | AARI_19840 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 0.661 |
| AARI_25380 | AARI_26500 | AARI_25380 | AARI_26500 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | 0.799 |
| AARI_25380 | ppiA | AARI_25380 | AARI_00120 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.911 |
| AARI_25380 | rpsA | AARI_25380 | AARI_19320 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.806 |
| AARI_25380 | rpsD | AARI_25380 | AARI_17330 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 30S ribosomal protein S20; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.816 |
| AARI_25380 | rpsE | AARI_25380 | AARI_23310 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.795 |
| AARI_25380 | rpsK | AARI_25380 | AARI_23220 | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.765 |
| AARI_26500 | AARI_02970 | AARI_26500 | AARI_02970 | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | Contains ankyrin repeats (PF0023). Such repeats occur in a large number of functionally diverse proteins mainly from eukaryotes. They have been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers. | 0.797 |
| AARI_26500 | AARI_19840 | AARI_26500 | AARI_19840 | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | Ribonuclease D cleaves multimeric tRNA precursor at the spacer region. Contribute to the 3 prime maturation of several stable RNA. | 0.910 |
| AARI_26500 | AARI_25380 | AARI_26500 | AARI_25380 | Match to protein family TIGR01970: ATP-dependent helicase HrpB. | Putative DEAD box helicase. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. | 0.799 |
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