Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AARI_19340 | AARI_26590 | Match to protein domain PF01522. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB, which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast and endoxylanases which hydrolyses glucosidic bonds in xylan. | SH3 domain-containing protein; Match to PF08239: bacterial SH3 domain. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins. | 0.436 |
AARI_26590 | AARI_19340 | SH3 domain-containing protein; Match to PF08239: bacterial SH3 domain. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins. | Match to protein domain PF01522. This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB, which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast and endoxylanases which hydrolyses glucosidic bonds in xylan. | 0.436 |
AARI_26590 | AARI_26600 | SH3 domain-containing protein; Match to PF08239: bacterial SH3 domain. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins. | Ferritin-like protein; Iron-storage protein. | 0.539 |
AARI_26600 | AARI_26590 | Ferritin-like protein; Iron-storage protein. | SH3 domain-containing protein; Match to PF08239: bacterial SH3 domain. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins. | 0.539 |