STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_28680Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (146 aa)    
Predicted Functional Partners:
AARI_28670
RNA polymerase sigma factor; Match to protein family TIGR02937. Sigma-70 family; Belongs to the sigma-70 factor family.
 
  
 0.948
AARI_28660
Hypothetical membrane protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 1.000) with cleavage site probability 0.702 between position 38 and 39. 1 transmembrane helice predicted by TMHMM2.0 after the signal peptide.
       0.596
AARI_28650
Hypothetical membrane protein; Signal peptide predicted by SignalP 3.0 HMM (probability: 1.000) with cleavage site probability 0.485 between position 41 and 42. 3 transmembrane helices predicted by TMHMM2.0 after the signal peptide.
       0.588
AARI_28690
Possible component of pyruvate dehydrogenase (EC 2. 3.1.12), branched-chain alpha-ketoacid dehydrogenase (EC 2. 3.1.168) or 2-oxoglutarate dehydrogenase (EC 2.3.1.61) complexes.
     
 0.527
AARI_28700
Possible component of pyruvate dehydrogenase (EC 2. 3.1.12), branched-chain alpha-ketoacid dehydrogenase (EC 2. 3.1.168) or 2-oxoglutarate dehydrogenase (EC 2.3.1.61) complexes.
     
 0.471
AARI_13400
DNA binding domain-containing protein; Identified by match to SM00530: Helix-turn-helix XRE-family like proteins. This is a large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).
  
     0.462
AARI_28710
Possible component of pyruvate dehydrogenase (EC 2. 3.1.12), branched-chain alpha-ketoacid dehydrogenase (EC 2. 3.1.168) or 2-oxoglutarate dehydrogenase (EC 2.3.1.61) complexes.
       0.457
AARI_22040
Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms.
 
     0.401
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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