STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AARI_30810Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. (287 aa)    
Predicted Functional Partners:
AARI_30790
Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. 4 transmembrane helices predicted by TMHMM2.0.
  
    0.812
AARI_30800
Response regulators are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions.
  
    0.780
AARI_23710
Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions.
  
  
 0.619
AARI_11140
LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function.
   
   0.550
AARI_20880
LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function.
  
   0.550
AARI_15130
5.2 Protein of unknown function similar to proteins from other organisms.
    
   0.544
AARI_28730
Conserved hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0.
  
  
 0.504
AARI_23720
PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator.
  
  
 0.449
AARI_23740
PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator.
  
  
 0.449
AARI_21280
Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription.
  
  
 0.412
Your Current Organism:
Glutamicibacter arilaitensis
NCBI taxonomy Id: 861360
Other names: Arthrobacter arilaitensis CIP 108037, Arthrobacter arilaitensis Re117, G. arilaitensis Re117, Glutamicibacter arilaitensis Re117
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