Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| AARI_11140 | AARI_15130 | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.531 |
| AARI_11140 | AARI_30810 | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. | 0.550 |
| AARI_15130 | AARI_11140 | 5.2 Protein of unknown function similar to proteins from other organisms. | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | 0.531 |
| AARI_15130 | AARI_20880 | 5.2 Protein of unknown function similar to proteins from other organisms. | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | 0.634 |
| AARI_15130 | AARI_30810 | 5.2 Protein of unknown function similar to proteins from other organisms. | Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. | 0.544 |
| AARI_20880 | AARI_15130 | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | 5.2 Protein of unknown function similar to proteins from other organisms. | 0.634 |
| AARI_20880 | AARI_30810 | LysM domain-containing protein; Match to protein domain PF01476. This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation. It may have a general peptidoglycan binding function. | Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. | 0.550 |
| AARI_21280 | AARI_23710 | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | 0.890 |
| AARI_21280 | AARI_23720 | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | 0.813 |
| AARI_21280 | AARI_23740 | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | 0.813 |
| AARI_21280 | AARI_30810 | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. | 0.412 |
| AARI_23710 | AARI_21280 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | 0.890 |
| AARI_23710 | AARI_23720 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | 0.923 |
| AARI_23710 | AARI_23740 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | 0.685 |
| AARI_23710 | AARI_28730 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | Conserved hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | 0.679 |
| AARI_23710 | AARI_30800 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | Response regulators are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | 0.447 |
| AARI_23710 | AARI_30810 | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | Hypothetical protein; 1 transmembrane helice predicted by TMHMM2.0. | 0.619 |
| AARI_23720 | AARI_21280 | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | Identified by match to protein family PF04012. This family includes PspA, which is a protein that suppresses sigma54-dependent transcription. | 0.813 |
| AARI_23720 | AARI_23710 | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | Protein-histidine kinases are key elements in two-component signal transduction systems, which enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions. | 0.923 |
| AARI_23720 | AARI_23740 | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | PspC domain-containing protein; Identified by match to protein domain PF04024. This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. | 0.785 |
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