Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AARI_32220 | AARI_32230 | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. | Conserved hypothetical protein; 5.1 Protein of unknown function similar to other proteins from the same organism. | 0.524 |
AARI_32220 | AARI_32240 | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. | Possible RNA polymerase sigma factor; C-terminal part of the protein: Sigma 70 regions 2 and 4 (PF04542, PF08281). Presence of numerous PT repeats (XPTX) at the C-terminal part of the protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.407 |
AARI_32230 | AARI_32220 | Conserved hypothetical protein; 5.1 Protein of unknown function similar to other proteins from the same organism. | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. | 0.524 |
AARI_32230 | AARI_32240 | Conserved hypothetical protein; 5.1 Protein of unknown function similar to other proteins from the same organism. | Possible RNA polymerase sigma factor; C-terminal part of the protein: Sigma 70 regions 2 and 4 (PF04542, PF08281). Presence of numerous PT repeats (XPTX) at the C-terminal part of the protein; Belongs to the sigma-70 factor family. ECF subfamily. | 0.558 |
AARI_32240 | AARI_32220 | Possible RNA polymerase sigma factor; C-terminal part of the protein: Sigma 70 regions 2 and 4 (PF04542, PF08281). Presence of numerous PT repeats (XPTX) at the C-terminal part of the protein; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms. | 0.407 |
AARI_32240 | AARI_32230 | Possible RNA polymerase sigma factor; C-terminal part of the protein: Sigma 70 regions 2 and 4 (PF04542, PF08281). Presence of numerous PT repeats (XPTX) at the C-terminal part of the protein; Belongs to the sigma-70 factor family. ECF subfamily. | Conserved hypothetical protein; 5.1 Protein of unknown function similar to other proteins from the same organism. | 0.558 |