Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AARI_32660 | AARI_32670 | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.503 |
AARI_32660 | AARI_32680 | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.503 |
AARI_32670 | AARI_32660 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | 0.503 |
AARI_32670 | AARI_32680 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.886 |
AARI_32670 | AARI_32690 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Identified by match to PF00753: metallo-beta-lactamase superfamily. Apart from the beta-lactamases, a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. | 0.524 |
AARI_32680 | AARI_32660 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Hypothetical membrane protein; 4 transmembrane helices predicted by TMHMM2.0. | 0.503 |
AARI_32680 | AARI_32670 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.886 |
AARI_32680 | AARI_32690 | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | Identified by match to PF00753: metallo-beta-lactamase superfamily. Apart from the beta-lactamases, a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. | 0.534 |
AARI_32690 | AARI_32670 | Identified by match to PF00753: metallo-beta-lactamase superfamily. Apart from the beta-lactamases, a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.524 |
AARI_32690 | AARI_32680 | Identified by match to PF00753: metallo-beta-lactamase superfamily. Apart from the beta-lactamases, a number of other proteins contain this domain. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. | Conserved hypothetical membrane protein; 3 transmembrane helices predicted by TMHMM2.0. | 0.534 |