node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AARI_15080 | AARI_18200 | AARI_15080 | AARI_18200 | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0109 family. | Match to PF10150: ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5 end of 16S RNA. | 0.664 |
AARI_15080 | AARI_34320 | AARI_15080 | AARI_34320 | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0109 family. | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | 0.922 |
AARI_18200 | AARI_15080 | AARI_18200 | AARI_15080 | Match to PF10150: ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5 end of 16S RNA. | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0109 family. | 0.664 |
AARI_18200 | AARI_34320 | AARI_18200 | AARI_34320 | Match to PF10150: ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5 end of 16S RNA. | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | 0.702 |
AARI_18200 | rho | AARI_18200 | AARI_12620 | Match to PF10150: ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5 end of 16S RNA. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.472 |
AARI_34320 | AARI_15080 | AARI_34320 | AARI_15080 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Conserved hypothetical protein; 5.2 Protein of unknown function similar to proteins from other organisms; Belongs to the UPF0109 family. | 0.922 |
AARI_34320 | AARI_18200 | AARI_34320 | AARI_18200 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Match to PF10150: ribonuclease E/G family. Ribonuclease E and Ribonuclease G are related enzymes that cleave a wide variety of RNAs. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5 end of 16S RNA. | 0.702 |
AARI_34320 | AARI_34340 | AARI_34320 | AARI_34340 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.913 |
AARI_34320 | gidB | AARI_34320 | AARI_34310 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Glucose-inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.889 |
AARI_34320 | lgt | AARI_34320 | AARI_19440 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.622 |
AARI_34320 | rho | AARI_34320 | AARI_12620 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.607 |
AARI_34320 | rnpA | AARI_34320 | AARI_34350 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.919 |
AARI_34320 | rpmH | AARI_34320 | AARI_34360 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | 50S ribosomal protein L34; One of the proteins from the large subunit of the prokaryotic ribosome; Belongs to the bacterial ribosomal protein bL34 family. | 0.733 |
AARI_34320 | trpA | AARI_34320 | AARI_19450 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.586 |
AARI_34320 | yidC | AARI_34320 | AARI_34330 | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | Putative preprotein translocase subunit YidC; The preprotein translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF). Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane compone [...] | 0.986 |
AARI_34340 | AARI_34320 | AARI_34340 | AARI_34320 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | R3H domain-containing protein; Identified by match to protein domain PF01424. The function of the domain is predicted to be binding ssDNA. | 0.913 |
AARI_34340 | gidB | AARI_34340 | AARI_34310 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Glucose-inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.739 |
AARI_34340 | rho | AARI_34340 | AARI_12620 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.580 |
AARI_34340 | rnpA | AARI_34340 | AARI_34350 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.991 |
AARI_34340 | rpmH | AARI_34340 | AARI_34360 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 50S ribosomal protein L34; One of the proteins from the large subunit of the prokaryotic ribosome; Belongs to the bacterial ribosomal protein bL34 family. | 0.814 |