STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM43384.1Hypothetical protein; KEGG: cff:CFF8240_0218 0.00047 ubiA; prenyltransferase K03179; Psort location: CytoplasmicMembrane, score: 10.00. (171 aa)    
Predicted Functional Partners:
EHM43385.1
Phenazine biosynthesis protein, PhzF family; KEGG: cco:CCC13826_0671 2.5e-54 seryl-tRNA synthetase (serine--tRNA ligase; SerRS) K06998; Psort location: Cytoplasmic, score: 9.97.
       0.508
EHM43383.1
ABC transporter, substrate-binding protein; KEGG: sah:SaurJH1_2478 1.2e-27 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the bacterial solute-binding protein 9 family.
       0.462
EHM43381.1
Hypothetical protein; KEGG: aco:Amico_1493 0.0026 KpsF/GutQ family protein K06041.
       0.438
EHM43382.1
Hypothetical protein.
       0.438
EHM43386.1
Macro domain protein; KEGG: isc:IscW_ISCW004288 1.0e-25 MACRO domain-containing protein, putative.
       0.438
Your Current Organism:
Anaeroglobus geminatus
NCBI taxonomy Id: 861450
Other names: A. geminatus F0357, Anaeroglobus geminatus F0357, Anaeroglobus geminatus str. F0357, Anaeroglobus geminatus strain F0357
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