STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM42872.1Hypothetical protein. (182 aa)    
Predicted Functional Partners:
EHM42873.1
Surface antigen variable number repeat-containing domain protein; KEGG: cre:CHLREDRAFT_195498 3.4e-18 OEP80; chloroplast outer envelope protein K07277; Psort location: OuterMembrane, score: 9.93.
       0.742
EHM42874.1
Hypothetical protein.
       0.531
EHM42871.1
Sigma-70 region 2; KEGG: sti:Sthe_0569 2.9e-19 RNA polymerase, sigma 28 subunit, FliA/WhiG K02405; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family.
       0.505
EHM42876.1
Outer membrane protein; KEGG: edi:EDI_201830 0.0030 GRIP domain-containing protein RUD3; Psort location: Cytoplasmic, score: 8.96; overlaps another CDS with the same product name.
       0.479
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
       0.471
EHM42877.1
Outer membrane protein; KEGG: bca:BCE_1678 0.0066 penicillin-binding protein; K05366 penicillin-binding protein 1A; overlaps another CDS with the same product name.
       0.470
EHM42875.1
Outer membrane protein; KEGG: hip:CGSHiEE_07435 3.4e-05 leuS; leucyl-tRNA synthetase K06142.
       0.468
EHM42879.1
KEGG: vpr:Vpar_0532 1.1e-72 lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.458
EHM42870.1
Hypothetical protein; KEGG: bme:BMEI1894 1.0e-12 gramicidin S biosynthesis GrsT protein K09800.
       0.445
Your Current Organism:
Anaeroglobus geminatus
NCBI taxonomy Id: 861450
Other names: A. geminatus F0357, Anaeroglobus geminatus F0357, Anaeroglobus geminatus str. F0357, Anaeroglobus geminatus strain F0357
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