STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM42180.1Hypothetical protein. (39 aa)    
Predicted Functional Partners:
EHM42181.1
Hypothetical protein; KEGG: vpr:Vpar_1362 5.3e-50 transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase); Psort location: Cytoplasmic, score: 9.97.
       0.594
mfd
TRCF domain protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.594
EHM42183.1
KEGG: apb:SAR116_1597 1.3e-11 integral membrane protein MviN K03980; Psort location: CytoplasmicMembrane, score: 10.00.
       0.594
EHM42184.1
MazG family protein; KEGG: bmq:BMQ_0078 1.4e-97 tetrapyrrole (corrin/porphyrin) methylase, MazG protein K02499; Psort location: Cytoplasmic, score: 8.96.
       0.551
EHM42179.1
Ornithine cyclodeaminase/mu-crystallin family protein; KEGG: cbf:CLI_2638 9.1e-80 ornithine cyclodeaminase; K01750 ornithine cyclodeaminase; Psort location: Cytoplasmic, score: 9.97.
       0.494
EHM42185.1
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.451
Your Current Organism:
Anaeroglobus geminatus
NCBI taxonomy Id: 861450
Other names: A. geminatus F0357, Anaeroglobus geminatus F0357, Anaeroglobus geminatus str. F0357, Anaeroglobus geminatus strain F0357
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