STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM40697.1Helicase protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the Uv [...] (252 aa)    
Predicted Functional Partners:
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
 
 0.999
EHM40696.1
KEGG: sax:USA300HOU_0786 1.6e-167 uvrB; excinuclease ABC subunit B K03702; Psort location: Cytoplasmic, score: 9.97.
  
  0.996
EHM40701.1
KEGG: bsu:BSU28490 4.1e-52 uvrC; excinuclease ABC subunit C K03703; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.970
EHM40699.1
GIY-YIG catalytic domain protein; KEGG: clo:HMPREF0868_1001 3.4e-07 uvrC; excinuclease ABC, C subunit K03703.
  
 
 0.957
EHM42181.1
Hypothetical protein; KEGG: vpr:Vpar_1362 5.3e-50 transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase); Psort location: Cytoplasmic, score: 9.97.
 
  
 0.897
EHM40700.1
Hypothetical protein; KEGG: reh:H16_A2547 2.8e-07 uvrC; excinuclease ABC subunit C K03703.
  
 
 0.887
EHM41133.1
Phage tail component protein; KEGG: vpr:Vpar_1000 1.6e-176 ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.718
EHM41134.1
Hypothetical protein; KEGG: vpr:Vpar_1000 1.7e-42 ATP-dependent DNA helicase PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.718
EHM40695.1
Hypothetical protein.
       0.559
EHM40159.1
Hypothetical protein; KEGG: mpe:MYPE6470 0.00073 parC; DNA topoisomerase IV subunit A; K02621 topoisomerase IV subunit A; Psort location: Cytoplasmic, score: 8.96.
    
   0.541
Your Current Organism:
Anaeroglobus geminatus
NCBI taxonomy Id: 861450
Other names: A. geminatus F0357, Anaeroglobus geminatus F0357, Anaeroglobus geminatus str. F0357, Anaeroglobus geminatus strain F0357
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