STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ93937.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (310 aa)    
Predicted Functional Partners:
GAQ95058.1
Peptide/nickel transport system permease protein.
 
 0.997
GAQ95057.1
Peptide/nickel transport system permease protein.
 0.975
GAQ95707.1
ABC-2 type transport system ATP-binding protein.
  
 
0.889
GAQ94106.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.876
GAQ94130.1
Peptide/nickel transport system substrate-binding protein.
 
 
 0.876
GAQ93936.1
Hypothetical protein.
       0.784
GAQ94448.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
 
 0.570
GAQ93935.1
Heptosyltransferase-2.
       0.559
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.559
TAGGR_198
Predicted DNA-binding protein with PD1-like DNA-binding motif.
       0.559
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.