STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_112Nucleotidyltransferase domain-containing protein. (143 aa)    
Predicted Functional Partners:
TAGGR_113
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
 
 
   0.913
TAGGR_110
Uroporphyrinogen III methyltransferase.
       0.773
TAGGR_111
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
       0.773
TAGGR_19
Hypothetical protein.
 
   
 0.748
TAGGR_114
Hypothetical protein.
       0.705
TAGGR_18
Nucleotidyltransferase domain-containing protein.
       0.679
GAQ94397.1
Predicted nucleotidyltransferase.
 
     0.652
GAQ94396.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
 
 
   0.640
GAQ94152.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
 
 
   0.639
GAQ95706.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
 
 
   0.630
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.