STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ93957.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
GAQ93958.1
Hypothetical protein.
 
     0.954
GAQ93960.1
Single-strand DNA-binding protein.
 
     0.800
rpsR
Small subunit ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.788
GAQ93956.1
HNH endonuclease.
       0.784
rpsF
Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.773
GAQ95083.1
Hypothetical protein.
  
     0.706
GAQ95335.1
Hypothetical protein.
  
     0.663
GAQ95654.1
Hypothetical protein.
  
     0.607
GAQ94131.1
Outer membrane lipoprotein carrier protein.
  
     0.600
TAGGR_380
LPS-assembly protein.
  
     0.573
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.